PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn039351
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 297aa    MW: 33958.1 Da    PI: 4.6681
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn039351genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.22.7e-1793194199
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                 f+k+l +sdv++++r+++pkk ae++   + ++e++ +++ d +g  +W++k++y  +++s++yvl+ ++ +Fv+ +gLk+gD ++++  ++ +++++v
  Achn039351  93 FQKELQTSDVNSLRRMIVPKKSAEAYlpALFEKEGFFISMDDMDGlHVWSFKFRYwpNNTSRMYVLE-NTGDFVNTHGLKQGDYMMLY--QDyQNQNYV 188
                 99**************************66667899*********99******9988899999**99.********************..666888888 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++++
  Achn039351 189 IRARKA 194
                 888765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-2588203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-2091192IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-2291193No hitNo description
PfamPF023621.1E-1493194IPR003340B3 DNA binding domain
SMARTSM010191.2E-1693195IPR003340B3 DNA binding domain
PROSITE profilePS508639.4693195IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGKNEARGFV AGGACFGKAR GDRVRKTREC DEGESDRIEL TPDLVGAVTS LCVIQRKKRM  60
ARQRRSSLNV LAFSHVPPLP ARAIDRTRLR FLFQKELQTS DVNSLRRMIV PKKSAEAYLP  120
ALFEKEGFFI SMDDMDGLHV WSFKFRYWPN NTSRMYVLEN TGDFVNTHGL KQGDYMMLYQ  180
DYQNQNYVIR ARKASDQDSY TDSAVDDYVP DEFEVNDCDQ VVPMNFSAVD GTEMPFVYET  240
TFSSDSETSY VYETTFSNDS LFDFWSGPMT YSSKVEPIGS FESIENLSME ELLLSF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007031991.11e-91AP2/B3-like transcriptional factor family protein isoform 1
SwissprotQ9LW314e-68FUS3_ARATH; B3 domain-containing transcription factor FUS3
TrEMBLA0A061EET51e-91A0A061EET5_THECC; AP2/B3-like transcriptional factor family protein isoform 1
STRINGPOPTR_0017s08820.17e-88(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80452125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.12e-69B3 family protein